pandaspgs.browser

open_in_dbsnp 

open_in_dbsnp(variant_id: str) -> bool

This function launches the web browser at dbSNP and opens a tab for each SNP identifier.

Parameters:
  • variant_id (str) –

    A variant identifier, a character vector.
Returns:
  • bool –

    Returns TRUE if successful. Note however that this function is run for its side effect.

 
from pandaspgs.browser import open_in_dbsnp
open_in_dbsnp('rs56261590')

open_in_pubmed 

open_in_pubmed(pubmed_id: str) -> bool

This function launches the web browser and opens a tab for each PubMed citation.

Parameters:
  • pubmed_id (str) –

    A PubMed identifier, either a character or an integer vector.
Returns:
  • bool –

    Returns TRUE if successful. Note however that this function is run for its side effect

 
from pandaspgs.browser import open_in_pubmed
open_in_pubmed('26301688')

open_publication_in_pgs_catalog 

open_publication_in_pgs_catalog(pgp_id: str) -> bool

This function launches the web browser and opens a tab for each identifier on the PGS Catalog web graphical user interface: https://www.pgscatalog.org/.

Parameters:
  • pgp_id (str) –

    This argument indicates the type of the identifiers passed in identifier
Returns:
  • bool –

    Returns TRUE if successful, or FALSE otherwise. But note that this function is run for its side effect.

 
from pandaspgs.browser import open_publication_in_pgs_catalog
open_publication_in_pgs_catalog('PGP000001')

open_sample_set_in_pgs_catalog 

open_sample_set_in_pgs_catalog(pss_id: str) -> bool

This function launches the web browser and opens a tab for each identifier on the PGS Catalog web graphical user interface: https://www.pgscatalog.org/.

Parameters:
  • pss_id (str) –

    This argument indicates the type of the identifiers passed in identifier
Returns:
  • bool –

    Returns TRUE if successful, or FALSE otherwise. But note that this function is run for its side effect.

 
from pandaspgs.browser import open_sample_set_in_pgs_catalog
open_sample_set_in_pgs_catalog('PSS000001')

open_score_in_pgs_catalog 

open_score_in_pgs_catalog(pgs_id: str) -> bool

This function launches the web browser and opens a tab for each identifier on the PGS Catalog web graphical user interface: https://www.pgscatalog.org/.

Parameters:
  • pgs_id (str) –

    This argument indicates the type of the identifiers passed in identifier
Returns:
  • bool –

    Returns TRUE if successful, or FALSE otherwise. But note that this function is run for its side effect.

 
from pandaspgs.browser import open_score_in_pgs_catalog
open_score_in_pgs_catalog('PGS000001')

open_trait_in_pgs_catalog 

open_trait_in_pgs_catalog(efo_id: str) -> bool

This function launches the web browser and opens a tab for each identifier on the PGS Catalog web graphical user interface: https://www.pgscatalog.org/.

Parameters:
  • efo_id (str) –

    This argument indicates the type of the identifiers passed in identifier
Returns:
  • bool –

    Returns TRUE if successful, or FALSE otherwise. But note that this function is run for its side effect.

 
from pandaspgs.browser import open_trait_in_pgs_catalog
open_trait_in_pgs_catalog('EFO_0001645')