Object ccGenomicTrack will call the function circlize::circos.genomicIdeogram while drawing.
Arguments
- ...
Arguments passed on to
circlize::circos.genomicIdeogram
cytoband
A data frame or a file path, pass to
read.cytoband
.species
Abbreviations of the genome, pass to
read.cytoband
.track.height
Height of the ideogram track.
track.margin
Margins for the track.
Value
Object ccGenomicTrack
Examples
library(circlizePlus)
cc = ccPlot(initMode = "initializeWithIdeogram",chromosome.index = "chr1", plotType = NULL)
human_cytoband = read.cytoband(species = "hg19")$df
t2=ccGenomicIdeogram(human_cytoband)
cc+t2
circos.clear()