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Object ccGenomicTrack will call the function circlize::circos.genomicIdeogram while drawing.

Usage

ccGenomicIdeogram(...)

Arguments

...

Arguments passed on to circlize::circos.genomicIdeogram

cytoband

A data frame or a file path, pass to read.cytoband.

species

Abbreviations of the genome, pass to read.cytoband.

track.height

Height of the ideogram track.

track.margin

Margins for the track.

Value

Object ccGenomicTrack

Examples

library(circlizePlus)
cc = ccPlot(initMode = "initializeWithIdeogram",chromosome.index = "chr1", plotType = NULL)
human_cytoband = read.cytoband(species = "hg19")$df
t2=ccGenomicIdeogram(human_cytoband)
cc+t2

circos.clear()