S4 class ccGenomicTrack — ccGenomicTrack-class • circlizePlus

S4 class ccGenomicTrack

Slots

func: character. Normally it is "circos.genomicTrack" or "circos.genomicIdeogram" or "circos.genomicHeatmap" or "circos.genomicLabels" or"circos.genomicRainfall" or "circos.genomicDensity".
params: list. A named list that stores the parameters of the function called by the backend.
trackGeoms: list. A list where ccTrackGeom are stored.
cells: list. A list where ccCell are stored.

Examples

library(circlizePlus)
cc = ccPlot(initMode = "initializeWithIdeogram",chromosome.index = "chr1", plotType = NULL)
bed = generateRandomBed(nr = 300)
t1 = ccGenomicTrack(bed, panel.fun = function(region, value, ...) {
  circos.genomicPoints(region, value, pch = 16, cex = 0.5, ...)
})
cc+t1

circos.clear()