Draw violin plots — ccViolin • circlizePlus

Object ccCellGeom will call the function circlize::circos.violin while drawing.

Usage

ccViolin(
  value,
  pos,
  violin_width = 0.8,
  col = NA,
  border = "black",
  lwd = par("lwd"),
  lty = par("lty"),
  show_quantile = TRUE,
  pt.col = par("col"),
  cex = par("cex"),
  pch = 16,
  max_density = NULL
)

Arguments

value: A numeric vector, a matrix or a list. If it is a matrix, boxplots are made by columns.
pos: Positions of the boxes.
violin_width: Width of violins.
col: Filled color of boxes.
border: Color for the border as well as the quantile lines.
lwd: Line width.
lty: Line style
show_quantile: Whether to show the quantile lines.
pt.col: Point color
cex: Point size.
pch: Point type.
max_density: The maximal density value across several violins. It is used to compare between violins.

Value

Object ccCellGeom

Examples

# \donttest{
library(circlizePlus)
cc <- ccPlot(sectors = letters[1:4], xlim = c(0, 10))
track <- ccTrack(ylim = c(0, 1))
cell <- ccCell(sector.index = "a") + ccViolin(value = replicate(runif(10),
n = 10, simplify = FALSE), pos = 1:10 - 0.5, col = 1:10)
track <- track + cell
cc + track
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length

# }