Draw violin plots

Object ccCellGeom will call the function circlize::circos.violin while drawing.

Usage

ccViolin(...)

Arguments

...

Arguments passed on to circlize::circos.violin

value

A numeric vector, a matrix or a list. If it is a matrix, boxplots are made by columns.

pos

Positions of the boxes.

violin_width

Width of violins.

col

Filled color of boxes.

border

Color for the border as well as the quantile lines.

lwd

Line width.

lty

Line style

show_quantile

Whether to show the quantile lines.

cex

Point size.

pch

Point type.

pt.col

Point color

max_density

The maximal density value across several violins. It is used to compare between violins.

sector.index

Index of sector.

track.index

Index of track.

Value

Object ccCellGeom

Examples

library(circlizePlus)
cc=ccPlot(sectors=letters[1:4], xlim = c(0, 10))
track=ccTrack(ylim = c(0, 1))
cell=ccCell(sector.index = 'a')+ccViolin(value=replicate(runif(10), n = 10, simplify = FALSE), pos=1:10 - 0.5,col = 1:10)
track=track+cell
cc+track
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length
#> Warning: longer object length is not a multiple of shorter object length